Journal of Bioinformatics and Computational Biology (JBCB)

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Print ISSN: 0219-7200
Online ISSN: 1757-6334

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Journal of Bioinformatics and Computational Biology (JBCB)

Accepted Papers | Online Ready | Current Issue | 2011 | 2010 | 2009 | All Volumes (2003-2011)

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The "Online Ready" section features articles which have been formatted, checked, and finalized. These articles are citable by their volume number, article ID, and DOI.

A selection of highly cited articles is now freely accessible. Click here to access.

WorldSciNet OPEN ACCESS

The following articles are on Open Access:

Vol. 9 No. 1 (February 2011) pp. 179-206
The Janus-Faced E-Values of HMMER2: Extreme Value Distribution or Logistic Function?
Wing-Cheong Wong, Sebastian Maurer-Stroh and Frank Eisenhaber
DOI: 10.1142/S0219720011005264

Vol. 8 No. 5 (October 2010) pp. 885-900
Improving the Inter-Corpora Compatibility for Protein Annotations
Yue Wang, Jin-Dong Kim, Rune Sætre, Sampo Pyysalo, Tomoko Ohta and Jun'ichi Tsujii
DOI: 10.1142/S0219720010004999

Vol. 8 No. 5 (October 2010) pp. 901-916
A Re-Evaluation of Biomedical Named Entity�Term Relations
Tomoko Ohta, Sampo Pyysalo, Jin-Dong Kim and Jun'ichi Tsujii
DOI: 10.1142/S0219720010005014

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Current Issue

Volume: 9, Issue: supp01 (December 2011)
Special Issue: Selected Papers from GIW 2011; Guest Editors: In-Sun Chu, Osamu Gotoh and Insuk Lee
INTRODUCTION — Progresses in Genome Informatics IN-SUN CHU, OSAMU GOTOH and INSUK LEE DOI No: 10.1142/S0219720011005823 Page: v-vii Abstract \| Full Text - Free Access (PDF, 129KB) \| References - Free Access
Research Papers
CSCORE: A SIMPLE YET EFFECTIVE SCORING FUNCTION FOR PROTEIN–LIGAND BINDING AFFINITY PREDICTION USING MODIFIED CMAC LEARNING ARCHITECTURE XUCHANG OUYANG, STEPHANUS DANIEL HANDOKO and CHEE KEONG KWOH DOI No: 10.1142/S021972001100577X Page: 1-14 Abstract \| Full Text - Open Access (PDF, 1548KB) \| References - Open Access \| *Supplementary Material*
DISCOVERY AND EVALUATION OF POTENTIAL SONIC HEDGEHOG SIGNALING PATHWAY INHIBITORS USING PHARMACOPHORE MODELING AND MOLECULAR DYNAMICS SIMULATIONS SWAN HWANG, SUNDARAPANDIAN THANGAPANDIAN, YUNO LEE, SUGUNADEVI SAKKIAH, SHALINI JOHN and KEUN WOO LEE DOI No: 10.1142/S0219720011005732 Page: 15-35 Abstract \| Full Text - Open Access (PDF, 2156KB) \| References - Open Access
FOLDING ELASTIC TRANSMEMBRANE HELICES TO FIT IN A LOW-RESOLUTION IMAGE BY ELECTRON MICROSCOPY YUTAKA UENO, KAZUNORI KAWASAKI, OSAMU SAITO, MASAFUMI ARAI and MAKIKO SUWA DOI No: 10.1142/S0219720011005720 Page: 37-50 Abstract \| Full Text - Open Access (PDF, 3910KB) \| References - Open Access
SRMBUILDER: A USER-FRIENDLY TOOL FOR SELECTED REACTION MONITORING DATA ANALYSIS QUANHU SHENG, CHAOCHAO WU, ZHIDUAN SU and RONG ZENG DOI No: 10.1142/S0219720011005756 Page: 51-62 Abstract \| Full Text - Open Access (PDF, 1554KB) \| References - Open Access
A TRANSCRIPTOME ANALYSIS BY LASSO PENALIZED COX REGRESSION FOR PANCREATIC CANCER SURVIVAL TONG TONG WU, HAIJUN GONG and EDMUND M. CLARKE DOI No: 10.1142/S0219720011005744 Page: 63-73 Abstract \| Full Text (PDF, 230KB) \| References
INFERENCE OF S-SYSTEM MODELS OF GENE REGULATORY NETWORKS USING IMMUNE ALGORITHM TOMOYOSHI NAKAYAMA, SHIGETO SENO, YOICHI TAKENAKA and HIDEO MATSUDA DOI No: 10.1142/S0219720011005768 Page: 75-86 Abstract \| Full Text - Open Access (PDF, 595KB) \| References - Open Access

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